PENDEKATAN COMPUTER-AIDED DRUG DESIGN TERHADAP TURUNAN CARYOPHYLLENE KEMANGI (OCIMUM X AFRICANUM) SEBAGAI INHIBITOR BCL-2
DOI:
https://doi.org/10.31004/jkt.v7i1.55133Keywords:
ADME-Tox, BCL-2, caryophyllene, in silico, kanker lambung, kemangi (Ocimum x africanum)Abstract
Kanker lambung menyebabkan sekitar 700.000 kematian setiap tahun di seluruh dunia dan menempati urutan kedua dalam hal frekuensi. Terapi konvensional menggunakan venetoclax memiliki efek yang spesifik sebagai inhibitor B-Cell Lymphoma (BCL-2), namun sering dilaporkan efek samping neurotropenia, trombositopenia, hingga risiko tumor lysis syndrome (TLS). Minyak atsiri tanaman kemangi (Ocimum x africanum) diketahui memiliki kandungan metabolit sekunder sebagai inhibitor BCL-2. Penelitian ini bertujuan untuk mengevaluasi potensi senyawa turunan caryophyllene minyak atsiri kemangi sebagai kandidat inhibitor BCL-2 pada kanker lambung secara in silico. Penelitian ini menggunakan metode komputasi molecular docking dengan PyRx-AutoDock Vina, visualisasi ikatan residu asam amino dengan BIOVIA Discovery Studio Visualizer, prediksi parameter absorpsi, distribusi, metabolisme, ekskresi (ADME) dengan SwissADME berdasarkan Lipinski’s Rules, dan prediksi toksisitas berdasarkan Cramer Rules dengan ToxTree. Desain senyawa obat baru dari caryophyllene menunjukkan hasil nilai binding affinity -6.4 kkal/mol, Root Mean Square Deviation (RMSD) 1.76 Å, ikatan asam amino yang serupa dengan ligan natif, prediksi ADME sesuai parameter Lipinski’s Rules dan toksisitas sesuai parameter Cramer Rules. Dari penelitian ini yaitu bahwa senyawa baru turunan caryophyllene dapat digunakan dalam pengembangan sebagai kandidat obat oral baru sebagai inhibitor BCL-2, tetapi diperlukan uji lebih lanjut.References
Ao, J., Coimbra, T. S., Feghali, R., Ribeiro, R. P., Ramos, M. J., and Fernandes, P. A. (2021). The importance of intramolecular hydrogen bonds on the translocation of the small drug piracetam through a lipid bilayer †. https://doi.org/10.1039/d0ra09995c
Boonyanugomol, W., Rukseree, K., Prapatpong, P., Reamtong, O., Baik, S. C., Jung, M., Shin, M. K., Kang, H. L., and Lee, W. K. (2022). Endoplasmic Reticulum Stress and Impairment of Ribosome Biogenesis Mediate the Apoptosis Induced by Ocimum x africanum Essential Oil in a Human Gastric Cancer Cell Line. Medicina (Lithuania), 58(6). https://doi.org/10.3390/medicina58060799
Cao, Q., Wu, X., Zhang, Q., Gong, J., Chen, Y., You, Y., Shen, J., Qiang, Y., and Cao, G. (2023). Mechanisms of action of the BCL-2 inhibitor venetoclax in multiple myeloma: a literature review. In Frontiers in Pharmacology (Vol. 14). Frontiers Media SA. https://doi.org/10.3389/fphar.2023.1291920
Chudri, J. (2020). Kanker lambung: kenali penyebab sampai pencegahannya. Jurnal Biomedika Dan Kesehatan, 3(3). https://doi.org/10.18051/JBiomedKes.2020
Jha, N. K., Sharma, C., Hashiesh, H. M., Arunachalam, S., Meeran, M. N., Javed, H., Patil, C. R., Goyal, S. N., and Ojha, S. (2021). β-Caryophyllene, A Natural Dietary CB2 Receptor Selective Cannabinoid can be a Candidate to Target the Trinity of Infection, Immunity, and Inflammation in COVID-19. Frontiers in Pharmacology, 12, 590201. https://doi.org/10.3389/FPHAR.2021.590201
Kirubhanand, C., Selvaraj, J., Rekha, U. V., Vishnupriya, V., Sivabalan, V., Manikannan, M., Nalini, D., Vijayalakshmi, P., Rajalakshmi, M., and Ponnulakshmi, R. (2020). Molecular docking analysis of Bcl-2 with phyto-compounds. Bioinformation, 16(6), 468. https://doi.org/10.6026/97320630016468
Listyani, T. A., Addawiyyah, M., Raharjo, D., and Chyang, P. J. (2024). Docking and Structural Modification of Flavonoid Derivative Compounds as Cycloxygenas-2 Enzyme Inhibitors. Indonesian Journal of Global Health Research, 7(1), 311–322. https://doi.org/10.37287/ijghr.v7i1.4041
Listyani, T. A., Fauzi, F., and Wardani, T. S. (2022). In Silico ADME and Toxicity Studies Of Derivative Phthalimide Compounds as Non-Nucleoside Hiv-1 Reverse Transcriptase Inhibitor. In Global Health Science Group (Vol. 3, Issue 1). http://jurnal.globalhealthsciencegroup.com/index.php/PICNHS
Melati Yulia Kusumastuti, Debi Meilani, and Suhendra Tawarnate. (2021). Aktivitas Antibakteri Ekstrak, Fraksi Kloroform dan Fraksi n-Heksan Daun Kemangi terhadap Staphylococcus aureus dan Eschericia coli. Jurnal Indah Sains Dan Klinis, 2(1), 17–22. https://doi.org/10.52622/jisk.v2i1.11
Rifa’i, A. N., Falira Khoirunnisa Az-Zahra, Nyoman Ayu Anindya Maharani, Muhammad Zaim Muflih Syamsuddin, Baiq Aisha Aryuni Oeiya, I Made Gyanendra Nanda Tresna, Nova Izza Salsa Ramadhita, and Raehanul Bahraen. (2023). Kanker Gaster : Literature Review. Unram Medical Journal, 12(4), 385–390. https://doi.org/10.29303/jku.v12i4.984
Sailah, I., Tumilaar, S. G., Lombogia, L. T., Celik, I., and Tallei, T. E. (2021). Molecular docking and dynamics simulations study of selected phytoconstituents of “pangi” (Pangium edule reinw) leaf as anti-sars-cov-2. Philippine Journal of Science, 150(5), 925–937. https://doi.org/10.56899/150.05.06
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